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Home Online Courses Introduction to Generalised Linear Mixed Models for Ecologists (MMIE02)
MMIE02

Introduction to Generalised Linear Mixed Models for Ecologists

Learn to build and interpret linear, generalised linear, and multilevel models for ecological data using R, lme4, and rstanarm in this five day applied training course.

  • Duration: 5 Days, 6 hours per day
  • Next Date: February 2-6, 2026
  • Format: Live Online Format
TIME ZONE

UK (GMT) local time - All sessions will be recorded and made available to ensure accessibility for attendees across different time zones.

£450Registration Fee

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Course Description

This 5-day course offers a practical and theoretical introduction to statistical models, through the most fundamental and versatile statistical procedure in ecology: the linear model. We’ll begin by looking at simple linear models with both continuous and discrete predictors – this includes regression, ANOVA, ANCOVA, and all classic ANOVA designs. We’ll also look at extending these linear models to include counts and proportions as responses, and to include data that naturally falls into groups – such as repeated measures or spatial plots – which require a multilevel or hierarchical model.

Participants will learn to work with ecological data from both experiments and designs, where factors we’re interested in may be nested, crossed or in some way structured. We’ll cover ways to add flexibility into models, such as adding group-level predictors and overdispersion. We’ll learn and contrast both Bayesian and frequentist approaches to modelling. Along the way we’ll practice essential skills such as diagnostic plots, model selection, and predictions. We’ll do this by applying the models we’re studying to real-world data.

This course is ideal for ecologists and applied scientists working with grouped, hierarchical, or repeated-measures data.

The course will be taught using R and Rstudio, and the packages lme4 (for frequentist statistics) and rstanarm for Bayesian statistics.

What You’ll Learn

During the course we will cover the following:

  • Understand the linear model that underlies regression, ANOVA, ANCOVA, and all traditional designed experiments.
  • How to understand a model using plotted predictions.
  • Evaluate data using simulations.
  • Fit and interpret linear models, generalised linear models (GLMs) and hierarchical models using both lme4 and rstanarm.
  • Model count and binary data appropriately, including overdispersion and zero-inflation.
  • Communicate uncertainty and model results using plots and statistical summaries.

Course Format

Interactive Learning Format

Each day features a well-balanced combination of lectures and hands-on practical exercises, with dedicated time for discussing participants’ own data, time permitting.

Global Accessibility

All live sessions are recorded and made available on the same day, ensuring accessibility for participants across different time zones.

Collaborative Discussions

Open discussion sessions provide an opportunity for participants to explore specific research questions and engage with instructors and peers.

Comprehensive Course Materials

All code, datasets, and presentation slides used during the course will be shared with participants by the instructor.

Personalized Data Engagement

Participants are encouraged to bring their own data for discussion and practical application during the course.

Post-Course Support

Participants will receive continued support via email for 30 days following the course, along with on-demand access to session recordings for the same period.

Who Should Attend / Intended Audiences

This course is aimed at quantitative scientists who work with data to test hypotheses, estimate causal effects, or build predictive models. It is designed for participants who already have some experience in R, including installing and managing packages, organising data with the tidyverse, and creating visualisations with ggplot2, and who have a working installation of a recent R version with the lme4 and rstanarm packages. A basic foundation in statistics is recommended, as the course begins with a review of simple regression and then progressively builds towards more advanced modelling concepts and techniques.

Equipment and Software requirements

A laptop or desktop computer with a functioning installation of R and RStudio is required. Both R and RStudio are free, open-source programs compatible with Windows, macOS, and Linux systems.

A working webcam is recommended to support interactive elements of the course. We encourage participants to keep their cameras on during live Zoom sessions to foster a more engaging and collaborative environment.

While not essential, using a large monitor—or ideally a dual-monitor setup—can significantly enhance your learning experience by allowing you to view course materials and work in R simultaneously.

 

A comprehensive list of required packages will also be shared with participants ahead of the course to allow for pre-installation. Participants are required to install rstanarm in advance of the course, and to test it by running an example from the package vignette.

Download R Download RStudio Download Zoom

Dr Andrew MacDonald

Andrew is a community ecologist and entomologist, and an applied statistician also. It is the passion for learning, practicing, and talking about statistics that led him into collaborations with scientists from many different fields. Andrew has extensive experience in collaboration and consulting, and now has experience building statistical models of animal behaviour, community composition, occupancy modelling, tree growth, and survey data from humans – to name just a few. He’s especially passionate about helping ecologists connect their theories and their data through expressive statistical models. His favourite tools to do this with are R, brms, and Stan. His goal is to improve our ability to make predictions for ecological systems, and to build a community of practice around statistical methods in ecology.

 
Education & Career
• PhD in Zoology (Experimental community ecology)
• MSc in Botany (Invasive species ecology)
• Instructor and consultant on a wide range of ecological topics.

 
Teaching & Skills
• Teaching topics including GLMs, nonlinear models, and hierarchical models – usually with a Bayesian perspective.
• Training and advice regarding reproducible workflows and open science.
• Experienced in collaboration and in developing statistical methods to combine theory with a specific dataset.
 

Links
Google scholar

Blog

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Testimonials

PRStats offers a great lineup of courses on statistical and analytical methods that are super relevant for ecologists and biologists. My lab and I have taken several of their courses—like Bayesian mixing models, time series analysis, and machine/deep learning—and we've found them very informative and directly useful for our work. I often recommend PRStats to my students and colleagues as a great way to brush up on or learn new R-based statistical skills.

Rolando O. Santos

PhD Assistant Professor, Florida International University

Courses attended

SIMM05, IMDL03, ITSA02, GEEE01 and MOVE07

Testimonials

PRStats offers a great lineup of courses on statistical and analytical methods that are super relevant for ecologists and biologists. My lab and I have taken several of their courses—like Bayesian mixing models, time series analysis, and machine/deep learning—and we've found them very informative and directly useful for our work. I often recommend PRStats to my students and colleagues as a great way to brush up on or learn new R-based statistical skills.

Rolando O. Santos

PhD Assistant Professor, Florida International University

Courses attended

SIMM05, IMDL03, ITSA02, GEEE01 and MOVE07

Testimonials

PRStats offers a great lineup of courses on statistical and analytical methods that are super relevant for ecologists and biologists. My lab and I have taken several of their courses—like Bayesian mixing models, time series analysis, and machine/deep learning—and we've found them very informative and directly useful for our work. I often recommend PRStats to my students and colleagues as a great way to brush up on or learn new R-based statistical skills.

Rolando O. Santos

PhD Assistant Professor, Florida International University

Courses attended

SIMM05, IMDL03, ITSA02, GEEE01 and MOVE07

Frequently asked questions

Everything you need to know about the product and billing.

When will I receive instructions on how to join?

You’ll receive an email on the Friday before the course begins, with full instructions on how to join via Zoom. Please ensure you have Zoom installed in advance.

Do I need administrator rights on my computer?

Yes — administrator access is recommended, as you may need to install software during the course. If you don’t have admin rights, please contact us before the course begins and we’ll provide a list of software to install manually.

I’m attending the course live — will I also get access to the session recordings?

Yes. All participants will receive access to the recordings for 30 days after the course ends.

I can’t attend every live session — can I join some sessions live and catch up on others later?

Absolutely. You’re welcome to join the live sessions you can and use the recordings for those you miss. We do encourage attending live if possible, as it gives you the chance to ask questions and interact with the instructor. You’re also welcome to send questions by email after the sessions.

I’m in a different time zone and plan to follow the course via recordings. When will these be available?

We aim to upload recordings on the same day, but occasionally they may be available the following day.

I can’t attend live — how can I ask questions?

You can email the instructor with any questions. For more complex topics, we’re happy to arrange a short Zoom call at a time that works for both of you.

Will I receive a certificate?

Yes. All participants receive a digital certificate of attendance, which includes the course title, number of hours, course dates, and the instructor’s name.

When will I receive instructions on how to join?

You’ll receive an email on the Friday before the course begins, with full instructions on how to join via Zoom. Please ensure you have Zoom installed in advance.

Do I need administrator rights on my computer?

Yes — administrator access is recommended, as you may need to install software during the course. If you don’t have admin rights, please contact us before the course begins and we’ll provide a list of software to install manually.

I’m attending the course live — will I also get access to the session recordings?

Yes. All participants will receive access to the recordings for 30 days after the course ends.

I can’t attend every live session — can I join some sessions live and catch up on others later?

Absolutely. You’re welcome to join the live sessions you can and use the recordings for those you miss. We do encourage attending live if possible, as it gives you the chance to ask questions and interact with the instructor. You’re also welcome to send questions by email after the sessions.

I’m in a different time zone and plan to follow the course via recordings. When will these be available?

We aim to upload recordings on the same day, but occasionally they may be available the following day.

I can’t attend live — how can I ask questions?

You can email the instructor with any questions. For more complex topics, we’re happy to arrange a short Zoom call at a time that works for both of you.

Will I receive a certificate?

Yes. All participants receive a digital certificate of attendance, which includes the course title, number of hours, course dates, and the instructor’s name.

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MMIE02 ONLINE
MMIE02 ONLINE
£ 450.00
Unlimited
£450.00
2nd February 2026 - 6th February 2026
Delivered remotely (United Kingdom), Western European Time Zone, United Kingdom
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